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  • Alexander (Oleksandr) P. Demchenko

    Head of lab of Nanobiotechnology, Palladin Institute of Biochemistry

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    • Pdf_icon_disabled A triple-emission fluorescent probe reveals distinctive amyloid fibrillar polymorphism of wild-type alpha-synuclein and its familial Parkinson's disease mutants.

      Celej MS, Caarls W, Demchenko A(P, Jovin TM
      Biochemistry 2009 Aug; 48(31)

      Intracytoplasmic neuronal deposits containing amyloid fibrils of the 140-amino acid presynaptic protein alpha-synuclein (AS) are the hallmark of Parkinson's (PD) disease and related neurodegenerative disorders. Three point mutations (A53T, A30P, and ... expand abstractE46K) are linked to early onset PD. Compared to the wild-type (WT) protein, the mutants aggregate faster in vitro, but their fibrillar products are quite similar. Using the extrinsic multiple-emission probe 4'-(diethylamino)-3-hydroxyflavone (FE), we demonstrate unique and distinct spectroscopic signatures for the amyloid fibrils formed by the WT and mutant AS, presumably indicative of subtle differences in supramolecular structure. The two well-separated emission bands of the FE probe originate from a proton transfer reaction in the excited state. The ratiometric response constitutes a sensitive, tunable reporter of microenvironmental properties such as polarity and hydrogen bonding. The very distinctive fluorescence spectra of the FE probe bound to the four AS variants reflect different tautomeric equilibria in the excited state and the existence of at least two different binding sites in the fibrils for the dye. Deconvolution of the two-dimensional excitation-emission spectra leads to estimations of different local dielectric constants and extents of hydration characteristic of the proteins. The sensitivity of such a simple external probe to conformational alterations induced by point mutations is unprecedented and provides new insight into key phenomena related to amyloid fibrils: plasticity, polymorphism, propagation of structural features, and structure-function relationships underlying toxicity. collapse abstract

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    • Pdf_icon_disabled Nanoscopic description of biomembrane electrostatics: results of molecular dynamics simulations and fluorescence probing.

      Chemistry and physics of lipids 2009 Jul; 160(2)

      Electrostatic fields generated on and inside biological membranes are recognized to play a fundamental role in key processes of cell functioning. Their understanding requires an adequate description on the level of elementary charges and the reconstr... expand abstractuction of electrostatic potentials by integration over all elementary interactions. Out of all the available research tools, only molecular dynamics simulations are capable of this, extending from the atomic to the mesoscopic level of description on the required time and space scale. A complementary approach is that offered by molecular probe methods, with the application of electrochromic dyes. Highly sensitive to intermolecular interactions, they generate integrated signals arising from electric fields produced by elementary charges at the sites of their location. This review is an attempt to provide a critical analysis of these two approaches and their present and potential applications. The results obtained by both methods are consistent in that they both show an extremely complex profile of the electric field in the membrane. The nanoscopic view, with two-dimensional averaging over the bilayer plane and formal separation of the electrostatic potential into surface (Psi(s)), dipole (Psi(d)) and transmembrane (Psi(t)) potentials, is constructive in the analysis of different functional properties of membranes. collapse abstract

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    • pdf exist Monitoring biophysical properties of lipid membranes by environment-sensitive fluorescent probes.

      Demchenko A(P, Mély Y, Duportail G, Klymchenko AS
      Biophysical journal 2009 May; 96(9)

      We review the main trends in the development of fluorescence probes to obtain information about the structure, dynamics, and interactions in biomembranes. These probes are efficient for studying the microscopic analogs of viscosity, polarity, and hyd... expand abstractration, as well as the molecular order, environment relaxation, and electrostatic potentials at the sites of their location. Progress is being made in increasing the information content and spatial resolution of the probe responses. Multichannel environment-sensitive probes that can distinguish between different membrane physicochemical properties through multiple spectroscopic parameters show considerable promise. collapse abstract

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    • Pdf_icon_disabled Multiparametric probing of microenvironment with solvatochromic fluorescent dyes.

      Klymchenko AS, Demchenko A(P
      Methods in enzymology 450

      We describe new methodology for multiparametric probing of weak non-covalent interactions in the medium based on response of environment-sensitive fluorescent dyes. The commonly used approach is based on correlation of one spectroscopic parameter (e.... expand abstractg. wavelength shift) with environment polarity, which describes a superposition of universal and specific (such as hydrogen bonding) interactions. In our approach, by using several independent spectroscopic parameters of a dye, we monitor simultaneously each individual type of the interactions. For deriving these extra parameters the selected dye should exist in several excited and/or ground states. In the present work, we applied 4'-(diethylamino)-3-hydroxyflavone, which undergoes the excited-state intramolecular proton transfer (ESIPT) and thus exhibits an additional emission band belonging to an ESIPT product (tautomer) form of the dye. The spectroscopic characteristics of the excited normal and the tautomer states as well as of the ESIPT reaction of the dye are differently sensitive to the different types of interactions with microenvironment and therefore can be used for its multiparametric description. The new methodology allowed us to monitor simultaneously three fundamental physicochemical parameters of probe microenvironment: polarity, electronic polarizability and H-bond donor ability. The applications of this approach to binary solvent mixtures, reverse micelles, lipid bilayers and binding sites of proteins are presented and the limitations of this approach are discussed. We believe that the methodology of multiparametric probing will extend the capabilities of fluorescent probes as the tools in biomolecular and cellular research. collapse abstract

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    • Pdf_icon_disabled Site-selective Red-Edge effects.

      Methods in enzymology 450

      Observation of Red Edge effects is the basis of unique methodology that allows combination of site-photoselection with dynamics of molecular relaxations. The important dynamic information on molecular level can be obtained even by simple recording of... expand abstract steady-state fluorescence using the lifetime as the time marker. The extension to time domain allows distinguishing these relaxations from other dynamic processes that influence the excited-state energies. In this Chapter I briefly discuss the background of this technique and concentrate on quantitative measure of these effects and on importance of their distinction from ground-state heterogeneity. The peculiarity of Trp emission in proteins and the optimal selection of fluorescence probes are discussed. The Red Edge excitations influence dramatically the excited-state reactions that are coupled with dielectric relaxations and this opens a new fascinating prospect for protein and biomembrane studies. collapse abstract

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    • Pdf_icon_disabled A peptide-based, ratiometric biosensor construct for direct fluorescence detection of a protein analyte.

      Enander K, Choulier L, Olsson AL, Yushchenko DA, Kanmert D, Klymchenko AS, Demchenko A(P, Mély Y, Altschuh D
      Bioconjugate chemistry 2008 Aug; 19(9)

      We present the design, synthesis, and functional evaluation of peptide-based fluorescent constructs for wavelength-ratiometric biosensing of a protein analyte. The concept was shown using the high-affinity model interaction between the 18 amino acid ... expand abstractpeptide pTMVP and a recombinant antibody fragment, Fab57P. pTMVP was functionalized in two different positions with 6-bromomethyl-2-(2-furanyl)-3-hydroxychromone, an environmentally sensitive fluorophore with a two-band emission. The equilibrium dissociation constant of the interaction between pTMVP and Fab57P was largely preserved upon labeling. The biosensor ability of the labeled peptide constructs was evaluated in terms of the relative intensity change of the emission bands from the normal (N*) and tautomer (T*) excited-state species of the fluorophore ( I(N*)/I(T*)) upon binding of Fab57P. When the peptide was labeled in the C terminus, the I(N*)/I(T*) ratio changed by 40% upon analyte binding, while labeling close to the residues most important for binding resulted in a construct that completely lacked ratiometric biosensor ability. Integrated biosensor elements for reagentless detection, where peptides and ratiometric fluorophores are combined to ensure robustness in both recognition and signaling, are expected to become an important contribution to the design of future protein quantification assays in immobilized formats. collapse abstract

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    • Pdf_icon_disabled The blind search for the closed states of hinge-bending proteins.

      Yesylevskyy SO, Kharkyanen VN, Demchenko A(P
      Proteins 2008 Apr; 71(2)

      The hinge-bending proteins provide the most pronounced example of the large-amplitude slow motions in a number of proteins, which are critical for their functioning. They are often used as the test ground for developing novel approaches to the simula... expand abstracttion of slow protein dynamics. In the present study, we present the algorithm, which allows physically-consistent simulations of slow protein dynamics in globular proteins. Our algorithm is based on the hierarchical clustering of the correlation patterns (HCCP) technique of domain identification, which allows subdividing the protein into the hierarchy of the rigid-body-like clusters. The clusters are allowed to rotate relative to one another on the automatically identified hinges. The clusters are found in the course of automated, objective and well-tested procedure. In the present communication, our technique is applied to 10 hinge-bending proteins. For each of the proteins, we performed the blind search for the closed conformation, staring from the open one. Resulting closed conformations are compared with the closed states observed in crystallographic structures. It is shown that our technique produces realistic closed conformations for 8 out of 10 studied proteins. This demonstrates that HCCP technique can be used for finding alternative protein conformations and for sampling the slow motions in proteins. collapse abstract

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    • Pdf_icon_disabled Fluorescence sensing of intermolecular interactions and development of direct molecular biosensors.

      Altschuh D, Oncul S, Demchenko A(P
      Journal of molecular recognition : JMR 19(6)

      Molecular biosensors are devices of molecular size that are designed for sensing different analytes on the basis of biospecific recognition. They should provide two coupled functions - the recognition (specific binding) of the target and the transduc... expand abstracttion of information about the recognition event into a measurable signal. The present review highlights the achievements and prospects in design and operation of molecular biosensors for which the transduction mechanism is based on fluorescence. We focus on the general strategy of fluorescent molecular sensing, construction of sensor elements, based on natural and designed biopolymers (proteins and nucleic acids). Particular attention is given to the coupling of sensing elements with fluorescent reporter dyes and to the methods for producing efficient fluorescence responses. collapse abstract

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    • Pdf_icon_disabled Fluorescent biomembrane probe for ratiometric detection of apoptosis.

      Shynkar VV, Klymchenko AS, Kunzelmann C, Duportail G, Muller CD, Demchenko A(P, Freyssinet JM, Mely Y
      Journal of the American Chemical Society 2007 Feb; 129(7)

      Herein, we developed the first ratiometric fluorescent probe for apoptosis detection. This probe incorporates selectively into the outer leaflet of the cell plasma membrane and senses the loss of the plasma membrane asymmetry occurring during the ear... expand abstractly steps of apoptosis. The high specificity to the plasma membranes was achieved by introduction into the probe of a membrane anchor, composed of a zwitterionic group and a long (dodecyl) hydrophobic tail. The fluorescence reporter of this probe is 4'-(diethylamino)-3-hydroxyflavone, which exhibits excited-state intramolecular proton transfer (ESIPT), resulting in two-band emission highly sensitive to the lipid composition of the biomembranes. Fluorescence spectroscopy, flow cytometry, and microscopy measurements show that the ratio of the two emission bands of the probe changes dramatically in response to apoptosis. This response reflects the changes in the lipid composition of the outer leaflet of the cell plasma membrane because of the exposure of the anionic phospholipids from the inner leaflet at the early steps of apoptosis. Being ratiometric, the response of the new probe can be easily quantified on an absolute scale. This allows monitoring by laser scanning confocal microscopy the degree and spatial distribution of the apoptotic changes at the cell plasma membranes, a feature that can be hardly achieved with the commonly used fluorescently labeled annexin V assay. collapse abstract

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    • pdf exist The change of protein intradomain mobility on ligand binding: is it a commonly observed phenomenon?

      Yesylevskyy SO, Kharkyanen VN, Demchenko A(P
      Biophysical journal 2006 Oct; 91(8)

      Analysis of changes in the dynamics of protein domains on ligand binding is important in several aspects: for the understanding of the hierarchical nature of protein folding and dynamics at equilibrium; for analysis of signal transduction mechanisms ... expand abstracttriggered by ligand binding, including allostery; for drug design; and for construction of biosensors reporting on the presence of target ligand in studied media. In this work we use the recently developed HCCP computational technique for the analysis of stabilities of dynamic domains in proteins, their intrinsic motions and of their changes on ligand binding. The work is based on comparative studies of 157 ligand binding proteins, for which several crystal structures (in ligand-free and ligand-bound forms) are available. We demonstrate that the domains of the proteins presented in the Protein DataBank are far more robust than it was thought before: in the majority of the studied proteins (152 out of 157), the ligand binding does not lead to significant change of domain stability. The exceptions from this rule are only four bacterial periplasmic transport proteins and calmodulin. Thus, as a rule, the pattern of correlated motions in dynamic domains, which determines their stability, is insensitive to ligand binding. This rule may be the general feature for a vast majority of proteins. collapse abstract

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    • Pdf_icon_disabled Visualization and sensing of intermolecular interactions with two-color fluorescent probes.

      FEBS letters 2006 May; 580(12)

      We developed a new generic fluorescence sensing technology based on the change of relative intensities between two well-separated emission bands of the novel functional 3-hydroxychromone (3HC) dyes. A greatly enhanced self-calibrating wavelength-rati... expand abstractometric response is obtained to all major types of non-covalent interactions that can be used in sensing--to polarity, hydrogen bonding ability and to local electrostatic fields. This technology may find a broad range of applications--from homogeneous assays in solutions to microarrays, microfluidic devices, nanosensors and whole cell imaging systems. It allows transforming micelles or phospholipid vesicles into nanosensor devices. In cellular research a high sensitivity to membrane potentials can be obtained and the membrane changes during apoptosis detected. collapse abstract

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    • Pdf_icon_disabled The problem of self-calibration of fluorescence signal in microscale sensor systems.

      Lab on a chip 2005 Oct; 5(11)

      Most recent developments in fluorescent molecular sensor devices are based on "ON-OFF" switching, which is an operation with a single measurable parameter, commonly the quenching of total intensity. In the meantime, with this approach self-calibratio... expand abstractn on the molecular level is not achievable. This calibration is strongly needed in all kinds of microscale applications, including microarrays, microfluidic systems and living cell imaging. Different possibilities are discussed for overcoming this difficulty and an "OR-OR" switching concept is suggested that involves the two-channel detection as a promising solution. For achieving the desired efficiency specific conditions are needed: it should be a single reporter dye exhibiting rapid reversible excited-state reaction and providing two-band wavelength ratiometric response. collapse abstract

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    • Pdf_icon_disabled The future of fluorescence sensor arrays.

      Trends in biotechnology 2005 Aug; 23(9)

      The rapid progress in sensor and biosensor array technologies needs a general strategy in the design of fluorescence reporters. Such reporters should provide a high density of sensor elements, allow analysis of targets of different affinities, and be... expand abstract internally calibrated, reproducible and have a rapid readout. Several criteria are introduced here for the comparative evaluation of fluorescence-sensing techniques. It is shown that only the two-band wavelength ratiometric sensing with a single reporter dye exhibiting rapid reversible excited-state reaction can satisfy all these criteria and is a prospective candidate for further development. collapse abstract

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    • Pdf_icon_disabled Two-color fluorescent probes for imaging the dipole potential of cell plasma membranes.

      Shynkar VV, Klymchenko AS, Duportail G, Demchenko A(P, Mély Y
      Biochimica et biophysica acta 2005 Jun; 1712(2)

      The dipole potential (Psi(d)) constitutes a large and functionally important part of the electrostatic potential of cell plasma membranes. However, its direct measurement is not possible. Herein, new 3-hydroxyflavone fluorescent probes were developed... expand abstract that respond strongly to Psi(d) changes by a variation of the intensity ratio of their two well-separated fluorescence bands. Using fluorescence spectroscopy with cell suspensions and confocal microscopy with adherent cells, we showed, for the first time, two-color fluorescence ratiometric measurement and visualization of Psi(d) in cell plasma membranes. Using this new tool, a heterogeneous distribution of this potential within the membrane was evidenced. collapse abstract

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    • Pdf_icon_disabled The binding of novel two-color fluorescence probe FA to serum albumins of different species.

      Ercelen S, Klymchenko AS, Mély Y, Demchenko A(P
      International journal of biological macromolecules 2005 May; 35(5)

      The novel two-color ratiometric fluorescence probe FA belonging to a class of 3-hydroxychromone dyes was applied for characterization of binding sites in serum albumins obtained from seven species (bovine, dog, horse, human, pig, rabbit and sheep). O... expand abstractn strong and highly specific FA binding to the same location in protein structure, the species-dependent differences were observed in positions of absorption maxima, positions of two fluorescence emission bands and the intensity ratios between them. They were analyzed by multiparametric algorithm that allowed a detailed characterization of probe-binding sites and were characterized by very low polarity, high electronic polarizability and different extent of intermolecular hydrogen bonding. The species-dependent differences were also observed in time-resolved fluorescence emission decays. Fluorescence competition experiments with the drug warfarin, suggested the location of FA binding site within or in proximity to Domain IIA. collapse abstract

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    • Pdf_icon_disabled Optimization of fluorescence response in the design of molecular biosensors.

      Analytical biochemistry 2005 Jul; 343(1)

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    • Pdf_icon_disabled Simultaneous probing of hydration and polarity of lipid bilayers with 3-hydroxyflavone fluorescent dyes.

      Klymchenko AS, Mély Y, Demchenko A(P, Duportail G
      Biochimica et biophysica acta 2004 Oct; 1665(1-2)

      The penetration of water into the hydrophobic interior leads to polarity and hydration profiles across lipid membranes which are fundamental in the maintenance of membrane architecture as well as in transport and insertion processes into the membrane... expand abstract. The present paper is an original attempt to evaluate simultaneously polarity and hydration properties of lipid bilayers by a fluorescence approach. We applied two 3-hydroxyflavone probes anchored in lipid bilayers at a relatively precise depth through their attached ammonium groups. They are present in two forms: either in H-bond-free form displaying a two-band emission due to an excited state intramolecular proton transfer reaction (ESIPT), or in H-bonded form displaying a single-band emission with no ESIPT. The individual emission profiles of these forms were obtained by deconvolution of the probes' fluorescence spectra. The polarity of the probe surrounding the bilayer was estimated from the two-band spectra of the H-bond-free form, while the local hydration was estimated from the relative contribution of the two forms. Our results confirm that by increasing the lipid order (phase transition from fluid to gel phase, addition of cholesterol or decrease in the lipid unsaturation), the polarity and to a lesser extent, the hydration of the bilayers decrease simultaneously. In contrast, when fluidity (i.e. lipid order) is kept invariant, increase of temperature and of bilayer curvature leads to a higher bilayer hydration with no effect on the polarity. Furthermore, no correlation was found between dipole potential and the hydration of the bilayers. collapse abstract

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    • Pdf_icon_disabled Resolution of Cys and Lys labeling of alpha-crystallin with site-sensitive fluorescent 3-hydroxyflavone dye.

      Klymchenko AS, Avilov SV, Demchenko A(P
      Analytical biochemistry 2004 May; 329(1)

      Ratiometric fluorescent probes based on 3-hydroxyflavone (3HF) are highly sensitive tools for studying polarity, hydration, electronic polarizability, and electrostatics in different microheterogeneous systems, including protein molecules. In the pre... expand abstractsent work, a reactive derivative of 3HF, 6-bromomethyl-4'-diethylamino-3-hydroxyflavone, recently synthesized in our group, was applied to label covalently bovine lens alpha-crystallin. The labeling of SH and NH(2) groups are clearly distinguished by spectroscopic criteria. We observe that the NH(2) labeling creates the positive charge in the proximity to fluorophore, which results in strong internal Stark effect producing the shift in excitation spectrum by ca. 15 nm. Analysis of excitation-dependent fluorescence spectra allows separation of the emission profiles of these SH- and NH(2)-labeled species. Applying recently developed multiparametric analysis of the obtained emission spectra, we described the physicochemical properties of the sites of SH and NH(2) labeling in alpha-crystallin. The site of SH labeling has medium-low polarity (dielectric constant, epsilon = 4.9 +/- 0.9) is protic, and does not contain proximal aromatic residues (according to the obtained refractive index, n = 1.41 +/- 0.14). The site of NH(2) labeling is also of medium-low polarity. The novel label due to its two-wavelength ratiometric response and high sensitivity to the type of labeling may offer new possibilities in the studies of structure, dynamics, and interactions of proteins by probing their SH- and NH(2)-labeling sites. collapse abstract

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    • pdf exist Bimodal distribution and fluorescence response of environment-sensitive probes in lipid bilayers.

      Klymchenko AS, Duportail G, Demchenko A(P, Mély Y
      Biophysical journal 2004 Apr; 86(5)

      A remarkable heterogeneity is often observed in the spectroscopic properties of environment-sensitive fluorescence probes in phospholipid bilayers. To explain its origin, we provided a detailed investigation of the fluorescence excitation and emissio... expand abstractn spectra of 4'-dimethylamino-3-hydroxyflavone (probe F) in bilayer vesicles with the variations of fatty acid composition, polar heads, temperature, and cholesterol content. Probe F, due to excited-state intramolecular proton transfer, exhibits two bands in emission that are differently sensitive to intermolecular interactions-thereby allowing us to distinguish universal (dipole-dipole) and specific (H-bonding) interactions within the bilayer. Spectroscopic, quenching, and anisotropy data suggest the presence of two forms of probe F at different locations in the bilayer: an H-bond free form located below sn(1)-carbonyls and an H-bonded form located at the polar membrane interface. We provide a quantitative analysis of the distribution of the probe between these two locations as well as the polarity of these locations, and show that both the distribution and the polarity contribute to the probe response. Moreover, analysis of literature data on other environment-sensitive probes (Prodan, Laurdan, Nile Red, NBD lipids, etc.) in lipid bilayers allows us to suggest that the bimodal distribution in the lipid bilayer is probably a general feature of low-polar molecules with polar groups capable of H-bonding interactions. collapse abstract

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    • pdf exist Ultrasensitive two-color fluorescence probes for dipole potential in phospholipid membranes.

      Klymchenko AS, Duportail G, Mély Y, Demchenko A(P
      Proceedings of the National Academy of Sciences of the United States of America 2003 Sep; 100(20)

      The principle of electrochromic modulation of excited-state intramolecular proton-transfer reaction was applied for the design of fluorescence probes with high two-color sensitivity to dipole potential, Psid, in phospholipid bilayers. We report on th... expand abstracte effect of Psid variation on excitation and fluorescence spectra of two new 3-hydroxyflavone probes, which possess opposite orientations of the fluorescent moiety in the lipid bilayer. The dipole potential in the bilayer was modulated by the addition of 6-ketocholestanol or phloretin and by substitution of dimyristoyl phosphatidylcholine lipid with its ether analog 1,2-di-o-tetradecyl-sn-glycero-3-phosphocholine, and its value was estimated by the reference styryl dye 1-(3-sulfonatopropyl)-4-[beta[2-(di-n-octylamino)-6-naphthyl]vinyl]pyridinium betaine. We demonstrate that after Psid changes, the probe orienting in the bilayer similarly to the reference dye shows similar shifts in the excitation spectra, whereas the probe with the opposite orientation shows the opposite shifts. The new observation is that the response of 3-hydroxyflavone probes to Psid in excitation spectra is accompanied by and quantitatively correlated with dramatic changes of relative intensities of the two well separated emission bands that belong to the initial normal and the product tautomer forms of the excited-state intramolecular proton-transfer reaction. This provides a strong response to Psid by change in emission color. collapse abstract

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    • Pdf_icon_disabled Solvent influence on excited-state intramolecular proton transfer in 3-hydroxychromone derivatives studied by cryogenic high-resolution fluorescence spectroscopy.

      Bader AN, Pivovarenko V, Demchenko A(P, Ariese F, Gooijer C
      Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 2003 Apr; 59(7)

      High-resolution Shpol'skii spectra (recorded at 10 K in n-octane) of 3-hydroxychromone (3HC) substituted at the 2-position with a furan (3HC-F), a benzofuran (3HC-BF) or a naphthofuran group (3HC-NF) are presented. Being close analogues of 3-hydroxyf... expand abstractlavone (3HF), these compounds can undergo excited-state intramolecular proton transfer (ESIPT). Luminescence can occur from the normal N* state (blue) or from the tautomeric T* state (green). Whether blue or green emission is observed is strongly dependent on hydrogen-bonding interactions with the environment. For all three chromones studied, high-resolution emission spectra in the green region (T*-->T) were obtained in pure n-octane, showing four sites with distinct emission bands and detailed vibrational structures, whereas no blue emission was detected. Contrary to the spectra published for 3HF, the emission lines were very narrow (line-broadening effects beyond detection) which implies that the ESIPT rate constants are >10(12) s(-1), at least 25 times lower than for 3HF. In order to study the effects of hydrogen-bonding solvents, four isomers of octanol (1-, 2-, 3- and 4-octanol) were added, forming 1:1 complexes with the 3HC derivatives. For all the combinations considered both blue and additional green emission was observed and in some cases narrow-banded spectra were obtained, mostly in the green. Only for the 3HC-NF/2-octanol complex, narrow-banded emission was found both in the blue and in the green region. It is demonstrated that these emissions come from different configurations of the complex. Possible structures for the two complex species are proposed, supported by semi-empirical calculations on complex formation enthalpies. collapse abstract

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    • Pdf_icon_disabled Novel two-color fluorescence probe with extreme specificity to bovine serum albumin.

      Ercelen S, Klymchenko AS, Demchenko A(P
      FEBS letters 2003 Mar; 538(1-3)

      We report on strong, highly specific and stochiometric binding to bovine serum albumin of novel fluorescence probe FA, 2-(6-diethylaminobenzo[b]furan-2-yl)-3-hydroxychromone, that exhibits a very characteristic two-band fluorescence spectrum. Both ab... expand abstractsorption band and two fluorescence bands of FA are very sensitive to non-covalent interactions in the immediate environment of the probe. Multiparametric analysis of this spectroscopic information allows us to conclude that the binding site is characterized by very low polarity, high extent of screening from aqueous environment and unusually high electronic polarizability. The latter suggests the proximal location of probe FA to the aromatic amino acid residues in the binding site. The new probe can be proposed for the study of interaction of ligands and drugs of different nature with serum albumins. collapse abstract

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    • Pdf_icon_disabled Novel two-band ratiometric fluorescence probes with different location and orientation in phospholipid membranes.

      Klymchenko AS, Duportail G, Ozturk T, Pivovarenko VG, Mély Y, Demchenko A(P
      Chemistry & biology 2002 Oct; 9(11)

      3-hydroxyflavone (3-HF) derivatives are very attractive fluorescence sensors due to their ability to respond to small changes in their microenvironment via a dramatic alteration of the relative intensities of their two well-separated emission bands. ... expand abstractWe developed fluorescence probes with locations at different depths and orientations of 3-HF moiety in the phospholipid bilayer, which determine their fluorescence behavior. While the spectral shifts of the probes correlate with their binding site polarity, the intensity ratio is a complex parameter that is also sensitive to the local hydration. We demonstrate that even the deeply located probes sense this hydration effect, which can be modulated by the charge of the lipid heads and is anisotropic with respect to the bilayer plane. Thus the two-band ratiometric fluorescence probes can provide multiparametric information on the properties of lipid membranes at different depths. collapse abstract

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    • Pdf_icon_disabled The red-edge effects: 30 years of exploration.

      Luminescence : the journal of biological and chemical luminescence 17(1)

      In 1970, three laboratories independently made a discovery that, for aromatic fluorophores embedded into different rigid and highly viscous media, the spectroscopic properties do not conform to classical rules. The fluorescence spectra can depend on ... expand abstractexcitation wavelength, and the excited-state energy transfer, if present, fails at the "red" excitation edge. These red-edge effects were related to the existence of excited-state distribution of fluorophores on their interaction energy with the environment and the slow rate of dielectric relaxation of this environment. In these conditions the site-selection can be provided by variation of the energy of illuminating light quanta, and the behaviour of selected species can be followed as a function of time and other variables. These observations found extensive application in different areas of research: colloid and polymer science, molecular biophysics, photochemistry and photobiology. In particular, they led to the development of very productive methods of studying the dynamics of dielectric relaxations in protein and membranes, using the tryptophan emission and the emission of a variety of probes. These studies were extended to the time domain with the observation of new site-selective effects in emission intensity and anisotropy decays. They stimulated the emergence and development of cryogenic energy-selective and single-molecular techniques that became valuable tools in their own right in chemistry and biophysics research. Site-selection effects were discovered for electron-transfer and proton-transfer reactions if they depended on the dynamics of the environment. This review is focused on the progress in the field of red-edge effects, their applications and prospects. collapse abstract

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    • Pdf_icon_disabled Electrochromic modulation of excited-state intramolecular proton transfer: the new principle in design of fluorescence sensors.

      Klymchenko AS, Demchenko A(P
      Journal of the American Chemical Society 2002 Oct; 124(41)

      Internal Stark effect (or internal electrochromy) consists of the shift of light absorption and emission bands under the influence of electric field produced by proximal charges. In the studies of 3-hydroxyflavone (3HF) derivatives exhibiting the exc... expand abstractited-state intramolecular proton transfer (ESIPT), we describe a new phenomenon - a very strong internal electrochromic modulation of this reaction. Fluorescence spectra of 3HF derivatives with charged groups attached to the chromophore from the opposite sides without pi-electronic conjugation, N-[(4'-diethylamino)-3-hydroxy-6-flavonyl]methyl-N,N-dimethyloctylammonium bromide and 4-[4-[4'-(3-hydroxyflavonyl)]piperazino]-1-(3-sulfopropyl)pyridinium, were compared with those of their neutral analogues in a series of representative solvents. The introduction of the proximal charge results in shifts of absorption spectrum and of both normal (N) and tautomer (T) emission bands, which correspond to initial and phototautomer states of the ESIPT reaction. The observed shifts are in accordance with the Stark effect theory. The direction of the shift depends on the position of the proximal charge with respect to the chromophore. The magnitude of the shift depends strongly on the solvent dielectric constant and on screening or unscreening produced by addition of the hydrophobic salts. In all of these cases, the spectral shifts are accompanied by extremely strong variations of relative intensities of N and T emission bands. This signifies a strong influence of internal electric field on the ESIPT reaction, which produces a dramatic change of emission color. Thus, the coupling of the initial electrochromic sensory signal with the ESIPT reaction allows for the breaking of the limit in magnitude of response inherent to common electrochromic dyes. This suggests a new principle of designing the ultrasensitive electrochromic two-wavelength fluorescence sensors and probes for analytical chemistry, macromolecular science, and cellular biology. collapse abstract

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